The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Condition |
Ume6p
|
YHR014W
|
PubMed
Steber CM et al., Proc Natl Acad Sci U S A, 1995 Dec 19;92(26):12490-4Steber CM et al., Proc Natl Acad Sci U S A, 1995 Dec 19;92(26):12490-4 |
Indirect |
Northern blot - wt vs TF mutant |
Negative |
S288c |
Sporulation medium 24h |
PubMed
Sweet DH et al., Mol Cell Biol, 1997 Nov;17(11):6223-35Sweet DH et al., Mol Cell Biol, 1997 Nov;17(11):6223-35 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Williams RM et al., Proc Natl Acad Sci U S A, 2002 Oct 15;99(21):13431-6Williams RM et al., Proc Natl Acad Sci U S A, 2002 Oct 15;99(21):13431-6 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
SK1 |
Cells grown in YPAcetate medium to late log phase |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
SK1 |
Cells grown in YPD medium to late log phase |
PubMed
Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77Reimand J et al., Nucleic Acids Res, 2010 Aug;38(14):4768-77 |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Munding EM et al., Genes Dev, 2010 Dec 1;24(23):2693-704Munding EM et al., Genes Dev, 2010 Dec 1;24(23):2693-704 |
Direct |
DNA footprinting |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
Law MJ et al., Mol Cell Biol, 2014 Feb;34(4):631-42Law MJ et al., Mol Cell Biol, 2014 Feb;34(4):631-42 |
Direct |
ChIP |
N/A |
S288c |
mid-log phase |
PubMed
Lardenois A et al., Mol Genet Genomics, 2015 Oct;290(5):2031-46Lardenois A et al., Mol Genet Genomics, 2015 Oct;290(5):2031-46 |
Direct |
ChIP |
N/A |
S288c |
YPD |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
PubMed
Raithatha SA et al., Mol Cell Biol, 2021 Jun 23;41(7):e0037820Raithatha SA et al., Mol Cell Biol, 2021 Jun 23;41(7):e0037820 |
Direct |
ChIP |
N/A |
DSY1700 |
YPD medium |
Direct |
ChIP |
N/A |
DSY1700 |
Sporulation medium |
Direct |
ChIP |
N/A |
DSY1700 |
YP Acetate medium |
|