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DISCOVERER

Regulatory Associations:
- Search for TFs
- Search for Genes
- Search for Associations

Group genes:
- Group by TF
- Group by GO

Pattern Matching:
- Search by DNA Motif
- Find TF Binding Site(s)
- Search Motifs on Motifs

Utilities:
- ORF List ⇔ Gene List
- IUPAC Code Generation
Generate Regulation Matrix

Retrieve:
- TF-Consensus List
- Evidence Code List
- Upstream Sequence
- Flat files

About Yeastract:
- Contact Us
- Cite YEASTRACT
- Acknowledgments
- Credits


Support & suggestions:

KDBIO/INESC-ID IST

Evidence Code List

BSRG/IST

Evidence code: Experimental Evidence
Direct: alfa-gal - Wild type vs. target promoter mutant
Direct: ChIP
Direct: ChIP-on-chip
Direct: DNA footprinting
Direct: DNA footprinting - Wild type vs. target promoter mutant
Direct: EMSA
Direct: EMSA - Plasmid Titration Assay
Direct: EMSA - Wild type vs. target promoter mutant
Direct: FRAP
Direct: In vivo UV-photofootprinting
Direct: LacZ - Wild type vs. target promoter mutant
Direct: Library of genomic binding sites
Direct: Northern blotting - Wild type vs. target promoter mutant
Direct: Oligonucleotide affinity chromatography
Direct: transcription factor protein chip
Direct: Undefined
Indirect: CAT - Wild type vs. TF mutant
Indirect: Enzyme activity - Wild type vs. TF mutant
Indirect: GFP - Wild type vs. TF mutant
Indirect: GFP - Wild type vs. TF overexpression
Indirect: lacZ - Wild type vs. TF mutant
Indirect: lacZ - Wild type vs. TF overexpression
Indirect: luciferase - Wild type vs. TF mutant
Indirect: Microarrays - Wild type vs. TF mutant
Indirect: Microarrays wt vs TF mutant
Indirect: Northern blotting - Wild type vs. TF mutant
Indirect: Primer Extention - Wild type vs. TF mutant
Indirect: Proteomics - Wild type vs. TF mutant
Indirect: RT-PCR - Wild type vs. TF mutant
Indirect: S1 nuclease protection assays - Wild type vs. TF mutant
Indirect: SIL/MS - Wild type vs. TF mutant
Indirect: Slot blot hybridization - Wild type vs. TF mutant
Indirect: TAP - Wild type vs. TF mutant
Indirect: Western blotting - Wild type vs. TF mutant
Indirect: Western blotting - Wild type vs. TF overexpression
Undef
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