The Yeastract team, is actively curating each regulation evidence code, association type and environmental condition.
Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Condition |
Mcm1p
|
YFL026W
|
PubMed
Hwang-Shum JJ et al., Mol Gen Genet, 1991 Jun;227(2):197-204Hwang-Shum JJ et al., Mol Gen Genet, 1991 Jun;227(2):197-204 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Elble R et al., Proc Natl Acad Sci U S A, 1991 Dec 1;88(23):10966-70Elble R et al., Proc Natl Acad Sci U S A, 1991 Dec 1;88(23):10966-70 |
Indirect |
Northern blot - wt vs TF mutant |
Positive |
S288c |
Pheromone induction |
PubMed
Passmore S et al., Genes Dev, 1989 Jul;3(7):921-35Passmore S et al., Genes Dev, 1989 Jul;3(7):921-35 |
Direct |
EMSA |
N/A |
S288c |
in vitro |
PubMed
Ganter B et al., J Mol Biol, 1993 Dec 20;234(4):975-87Ganter B et al., J Mol Biol, 1993 Dec 20;234(4):975-87 |
Direct |
DNA footprinting |
N/A |
S288c |
in vitro |
PubMed
Kuo MH et al., Mol Cell Biol, 1994 Jan;14(1):348-59Kuo MH et al., Mol Cell Biol, 1994 Jan;14(1):348-59 |
Direct |
Library of genomic binding sites |
N/A |
S288c |
in vitro |
PubMed
Oehlen LJ et al., Mol Cell Biol, 1996 Jun;16(6):2830-7Oehlen LJ et al., Mol Cell Biol, 1996 Jun;16(6):2830-7 |
Indirect |
Northern blot - wt vs TF mutant |
Positive |
S288c |
15mg/mL nocodazole |
PubMed
Zhong H et al., J Biol Chem, 1997 Mar 28;272(13):8402-9Zhong H et al., J Biol Chem, 1997 Mar 28;272(13):8402-9 |
Indirect |
lacZ - wt vs TF mutant |
Negative |
S288c |
no growth conditions indicated |
PubMed
Koranda M et al., Nature, 2000 Jul 6;406(6791):94-8Koranda M et al., Nature, 2000 Jul 6;406(6791):94-8 |
N/A |
|
N/A |
S288c |
N/A |
PubMed
Simon I et al., Cell, 2001 Sep 21;106(6):697-708Simon I et al., Cell, 2001 Sep 21;106(6):697-708 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Lee TI et al., Science, 2002 Oct 25;298(5594):799-804Lee TI et al., Science, 2002 Oct 25;298(5594):799-804 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium; mid-log phase |
PubMed
Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104Harbison CT et al., Nature, 2004 Sep 2;431(7004):99-104 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Galgoczy DJ et al., Proc Natl Acad Sci U S A, 2004;():Galgoczy DJ et al., Proc Natl Acad Sci U S A, 2004;(): |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Workman CT et al., Science, 2006 May 19;312(5776):1054-9Workman CT et al., Science, 2006 May 19;312(5776):1054-9 |
Direct |
Chip-on-chip |
N/A |
S288c |
N/A |
PubMed
Tuch BB et al., PLoS Biol, 2008 Feb;6(2):e38Tuch BB et al., PLoS Biol, 2008 Feb;6(2):e38 |
Direct |
Chip-on-chip |
N/A |
S288c |
YPD medium or YPD medium + alpha-factor induction |
PubMed
Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314Rossi MJ et al., Nature, 2021 Apr;592(7853):309-314 |
Direct |
ChIP-exo |
N/A |
BY4741 |
YPD medium, 25.C |
|