Transcription Factor |
Target ORF/Genes |
References |
Evidence Code |
Evidence Experiment |
Association Type |
Strain |
Environmental Condition |
Gcn4p
|
YGR110W
|
PubMed
Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82Moxley JF et al., Proc Natl Acad Sci U S A, 2009 Apr 21;106(16):6477-82 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
BY4741 |
YNB media |
PubMed
Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911Staschke KA et al., J Biol Chem, 2010 May 28;285(22):16893-911 |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
EG328-1A |
RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 10 mM 3-AT |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
EG328-1A |
RNA prepared from wt and DELTAgcn4 cells treated for 1 h with 200 nM Rapamycin |
Indirect |
Microarray analysis - wt vs TF mutant |
Positive |
EG328-1A |
RNA prepared from wt and DELTAgcn4DELTAgln3 cells treated for 1 h with 10 mM 3-AT |
PubMed
Fendt SM et al., Mol Syst Biol, 2010;():Fendt SM et al., Mol Syst Biol, 2010;(): |
Indirect |
Microarray analysis - wt vs TF mutant |
Negative |
S288c |
YPD medium; mid-log phase |
PubMed
McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57McIsaac RS et al., Nucleic Acids Res, 2013 Feb 1;41(4):e57 |
Indirect |
Microarray analysis - wt vs TF overexpression |
Positive |
S288c |
YPD medium; mid-log phase |
PubMed
Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311Rawal Y et al., Mol Cell, 2018 Apr 19;70(2):297-311 |
Direct |
ChIP-seq |
N/A |
BY4741 |
Cells cultured in synthetic complete medium lacking isoleucine and valine (SC-Ilv) to log-phase (OD600=0.6-0.8) supplemented with SM at 1 microg/mL for 25 min to induce Gcn4 synthesis |
PubMed
Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000Holland P et al., Nucleic Acids Res, 2019 Jun 4;47(10):4986-5000 |
Direct |
ChIP-exo |
N/A |
CEN.PK 113-5D |
Cells were cultivated in chemostats in anaerobic glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h |
Direct |
ChIP-exo |
N/A |
CEN.PK 113-5D |
Cells were cultivated in chemostats in ethanol limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h |
Direct |
ChIP-exo |
N/A |
CEN.PK 113-5D |
Cells were cultivated in chemostats in respiratory glucose limited medium with a dilution rate of 0.1 h-1 at 30.C. Samples were collected after steady state was achieved for 48-60 h |